SITE-100
  • SITE100
    • PROJECT OVERVIEW
    • PROJECT AIMS
  • METHODOLOGY
    • General workflow
    • Field protocols >
      • BUILDING A FLIGHT INTERCEPTION TRAP
    • Specimen processing
    • Soil extractions
  • STUDY SITES
    • Oriental >
      • MIZORAM STATE, INDIA
      • HONGKONG
      • THAILAND
      • BORNEO (DANUM VALLEY), SABAH, MALAYSIA
      • GAOLIGONG MOUNTAINS
    • Palaearctic >
      • QINGLING MOUNTAINS, CHINA
      • BOOKHAM COMMON, UK
      • EUROPEAN ISLANDS (IBIOGEN PROJECT)
      • SPAIN
      • SOUTHERN URALS
      • TIANMU MOUNTAINS
      • GUTIAN MOUNTAINS
    • Americas >
      • PANAMA: CERRO HOYA
      • SOUTHERN APPALACHIANS, USA
      • PANAMA: BARRO COLORADO ISLAND
      • PANAMA: SANTA FE
      • HONDURAS
      • HUATULCO, MEXICO
      • CHAMELA, MEXICO
      • FRENCH GUIANA
  • SITE100 SERVER
  • GET INVOLVED
    • Adding an observatory
    • Soil observatories
    • Local barcoding studies
    • Naturalists and community science
    • PhD students and postdocs
  • CONTACT
  • New Page
Picture
Picture
The diagram shows the SITE100 workflow from field collecting to database entry. Samples from field plots are imaged and DNA is extracted from selected reference specimens, which are also used for shotgun sequencing (or long-range or multiple-short PCRs). The sequence database of (mostly) complete mitogenomes is used for tree construction. All other specimens are processed in bulk via metabarcoding, and after OTU clustering are subjected to phylogenetic placement. The growing database and tree are used for broader comparisons of global biodiversity.
Picture

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  • SITE100
    • PROJECT OVERVIEW
    • PROJECT AIMS
  • METHODOLOGY
    • General workflow
    • Field protocols >
      • BUILDING A FLIGHT INTERCEPTION TRAP
    • Specimen processing
    • Soil extractions
  • STUDY SITES
    • Oriental >
      • MIZORAM STATE, INDIA
      • HONGKONG
      • THAILAND
      • BORNEO (DANUM VALLEY), SABAH, MALAYSIA
      • GAOLIGONG MOUNTAINS
    • Palaearctic >
      • QINGLING MOUNTAINS, CHINA
      • BOOKHAM COMMON, UK
      • EUROPEAN ISLANDS (IBIOGEN PROJECT)
      • SPAIN
      • SOUTHERN URALS
      • TIANMU MOUNTAINS
      • GUTIAN MOUNTAINS
    • Americas >
      • PANAMA: CERRO HOYA
      • SOUTHERN APPALACHIANS, USA
      • PANAMA: BARRO COLORADO ISLAND
      • PANAMA: SANTA FE
      • HONDURAS
      • HUATULCO, MEXICO
      • CHAMELA, MEXICO
      • FRENCH GUIANA
  • SITE100 SERVER
  • GET INVOLVED
    • Adding an observatory
    • Soil observatories
    • Local barcoding studies
    • Naturalists and community science
    • PhD students and postdocs
  • CONTACT
  • New Page